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ASM3237658v1

Organism name:
Lactobacillus mulieris (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB3420
BioSample:
SAMN37434648
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2023/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_032376585.1 (latest)
RefSeq assembly accession:
GCF_032376585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAVTXD01
Assembly method:
SPAdes v. 3.15.5
Expected final version:
yes
Genome coverage:
235.048x
Sequencing technology:
Illumina NovaSeq

IDs: 19055931 [UID] 48563678 [GenBank] 48671538 [RefSeq]

See Genome Information for Lactobacillus mulieris

There are 69 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2023 10:30:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,728
CDSs (total)::1,677
Genes (coding)::1,664
CDSs (with protein)::1,664
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::13
CDSs (without protein)::13
Pseudo Genes (ambiguous residues)::0 of 13
Pseudo Genes (frameshifted)::8 of 13
Pseudo Genes (incomplete)::3 of 13
Pseudo Genes (internal stop)::3 of 13
Pseudo Genes (multiple problems)::1 of 13
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,821,790
Total ungapped length1,821,790
Number of contigs44
Contig N5084,248
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,821,790441,821,79084,24800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus mulierisLactobacillus mulieris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007095465.1Lactobacillus mulieristype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007095465.1Lactobacillus mulieristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4979.5987.29
Best-match type96.4979.5987.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna