U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3237713v1

Organism name:
Lactobacillus gasseri (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB1549
BioSample:
SAMN37434662
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2023/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_032377135.1 (latest)
RefSeq assembly accession:
GCF_032377135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAVTXR01
Assembly method:
SPAdes v. 3.15.5
Expected final version:
yes
Genome coverage:
186.507x
Sequencing technology:
Illumina NovaSeq

IDs: 19056181 [UID] 48564188 [GenBank] 48674758 [RefSeq]

See Genome Information for Lactobacillus gasseri

There are 342 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2023 10:11:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,001
CDSs (total)::1,951
Genes (coding)::1,880
CDSs (with protein)::1,880
Genes (RNA)::50
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2 (16S)
tRNAs::43
ncRNAs::3
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::38 of 71
Pseudo Genes (incomplete)::23 of 71
Pseudo Genes (internal stop)::19 of 71
Pseudo Genes (multiple problems)::8 of 71
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,981,741
Total ungapped length1,981,741
Number of contigs59
Contig N5059,794
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)59

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,981,741591,981,74159,79400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus gasseriLactobacillus gasseri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000014425.1Lactobacillus gasseri ATCC 33323 = JCM 1131type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000014425.1Lactobacillus gasseritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9887.4991.53
Best-match type98.9887.4991.53

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna