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ASM3380330v1

Organism name:
Streptococcus anginosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB9668
BioSample:
SAMN38159169
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2023/11/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_033803305.1 (latest)
RefSeq assembly accession:
GCF_033803305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAWWVQ01
Assembly method:
SPAdes v. 3.15.4
Expected final version:
yes
Genome coverage:
235.752x
Sequencing technology:
Illumina NextSeq

IDs: 19803751 [UID] 50254168 [GenBank] 50353828 [RefSeq]

See Genome Information for Streptococcus anginosus

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/14/2023 15:03:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,930
CDSs (total)::1,898
Genes (coding)::1,827
CDSs (with protein)::1,827
Genes (RNA)::32
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::26
ncRNAs::3
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::30 of 71
Pseudo Genes (incomplete)::42 of 71
Pseudo Genes (internal stop)::24 of 71
Pseudo Genes (multiple problems)::21 of 71
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,962,257
Total ungapped length1,962,257
Number of contigs39
Contig N50109,669
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,962,257391,962,257109,66900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus anginosusStreptococcus anginosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000474055.1Streptococcus anginosus SK52 = DSM 20563type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000474055.1Streptococcus anginosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.4882.4185.08
Best-match type94.4882.4185.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna