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xbir-COAC-16-VIII-22-M_v2023.1

Organism name:
Xiphophorus birchmanni (sheepshead swordtail)
Infraspecific name:
Strain: COAC
Sex:
male
BioSample:
SAMN38348965
BioProject:
PRJNA1043674
Submitter:
Stanford University
Date:
2024/02/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_036418095.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAXBVF01
Assembly method:
Hifiasm v. 0.16.1; YaHS v. 1.2a.2
Expected final version:
yes
Genome coverage:
73.0x
Sequencing technology:
PacBio Sequel; Illumina NextSeq

IDs: 21261391 [UID] 53510058 [GenBank]

See Genome Information for Xiphophorus birchmanni

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length727,610,968
Total ungapped length727,598,472
Gaps between scaffolds0
Number of scaffolds222
Scaffold N5032,557,555
Scaffold L5011
Number of contigs288
Contig N5026,085,954
Contig L5013
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)222

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_036418105.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM071326.1n/an/a0
Chromosome 2CM071327.1n/an/a0
Chromosome 3CM071328.1n/an/a0
Chromosome 4CM071329.1n/an/a0
Chromosome 5CM071330.1n/an/a0
Chromosome 6CM071331.1n/an/a0
Chromosome 7CM071332.1n/an/a0
Chromosome 8CM071333.1n/an/a0
Chromosome 9CM071334.1n/an/a0
Chromosome 10CM071335.1n/an/a0
Chromosome 11CM071336.1n/an/a0
Chromosome 12CM071337.1n/an/a0
Chromosome 13CM071338.1n/an/a0
Chromosome 14CM071339.1n/an/a0
Chromosome 15CM071340.1n/an/a0
Chromosome 16CM071341.1n/an/a0
Chromosome 17CM071342.1n/an/a0
Chromosome 18CM071343.1n/an/a0
Chromosome 19CM071344.1n/an/a0
Chromosome 20CM071345.1n/an/a0
Chromosome 22CM071346.1n/an/a0
Chromosome 23CM071347.1n/an/a0
Chromosome 24CM071348.1n/an/a0
Chromosome XCM071349.1n/an/a0
Chromosome Yn/an/an/a1
unplacedn/an/an/a196

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule727,594,379221727,581,88332,557,555660
Chromosome 1Assembled molecule32,989,239132,989,03932,989,23910
Chromosome 2Assembled molecule32,557,555132,557,35532,557,55510
Chromosome 3Assembled molecule34,303,778134,303,37834,303,77820
Chromosome 4Assembled molecule35,461,487135,461,08735,461,48720
Chromosome 5Assembled molecule34,332,534134,331,93434,332,53430
Chromosome 6Assembled molecule30,846,310130,845,66230,846,31050
Chromosome 7Assembled molecule32,918,823132,918,42332,918,82320
Chromosome 8Assembled molecule29,237,977129,237,37729,237,97730
Chromosome 9Assembled molecule32,604,941132,604,54132,604,94120
Chromosome 10Assembled molecule25,778,268125,777,66825,778,26830
Chromosome 11Assembled molecule29,124,794129,124,19429,124,79430
Chromosome 12Assembled molecule34,407,841134,407,64134,407,84110
Chromosome 13Assembled molecule29,747,452129,747,02829,747,45230
Chromosome 14Assembled molecule27,757,806127,757,40627,757,80620
Chromosome 15Assembled molecule24,679,487124,679,48724,679,48700
Chromosome 16Assembled molecule26,242,711126,242,51126,242,71110
Chromosome 17Assembled molecule21,284,767121,280,76721,284,767200
Chromosome 18Assembled molecule34,327,781134,327,55734,327,78120
Chromosome 19Assembled molecule28,417,858128,417,65828,417,85810
Chromosome 20Assembled molecule33,856,793133,856,59333,856,79310
Chromosome 22Assembled molecule30,381,017130,380,21730,381,01740
Chromosome 23Assembled molecule33,307,432133,307,03233,307,43220
Chromosome 24Assembled molecule15,357,000115,357,00015,357,00000
Chromosome XAssembled molecule26,455,710126,455,51026,455,71010
Chromosome YAllAssembled moleculeUnlocalized scaffolds1,847,87801,847,8781011,847,67801,847,6781,847,87801,847,878101000
unplacedAssembled molecule9,367,1401969,367,14066,58200
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,589116,58916,58900