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Source database (GenBank or RefSeq) File type

50377_D01

Organism name:: Staphylococcus simiae (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: NCTC13838
BioSample:: SAMEA4384339
BioProject:: PRJEB6403
Submitter:: SC
Date:: 2017/08/15
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_900187055.1 (latest)
RefSeq assembly accession:: GCF_900187055.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 339x

IDs: 1180911 [UID] 4960228 [GenBank] 4964158 [RefSeq]

See Genome Information for Staphylococcus simiae

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900187055.1	=	GCF_900187055.1	50377_D01	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:15:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,470
CDSs (total)::2,385
Genes (coding)::2,339
CDSs (with protein)::2,339
Genes (RNA)::85
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::23 of 46
Pseudo Genes (incomplete)::22 of 46
Pseudo Genes (internal stop)::11 of 46
Pseudo Genes (multiple problems)::9 of 46
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,643,976
Total ungapped length	2,643,976
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.98	97.84	99.57
Best-match type	99.98	97.84	99.57

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50377_D01

See Genome Information for Staphylococcus simiae

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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