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57269_D01

Organism name:
Campylobacter upsaliensis (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC11840
BioSample:
SAMEA104167214
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900446645.1 (latest)
RefSeq assembly accession:
GCF_900446645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UFUV01
Genome coverage:
100x

IDs: 1857641 [UID] 7040938 [GenBank] 7052628 [RefSeq]

See Genome Information for Campylobacter upsaliensis

There are 859 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,652,932
Total ungapped length1,652,932
Number of contigs2
Contig N501,588,719
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,652,93221,652,9321,588,71900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter upsaliensisCampylobacter upsaliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637395.1Campylobacter upsaliensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637395.1Campylobacter upsaliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.6286.5785.60
Best-match type96.6286.5785.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna