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45232_F01

Organism name:
Clostridioides difficile (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC13747
BioSample:
SAMEA3905374
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900446965.1 (latest)
RefSeq assembly accession:
GCF_900446965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UIGU01
Genome coverage:
100x

IDs: 1858411 [UID] 7043718 [GenBank] 7053648 [RefSeq]

See Genome Information for Clostridioides difficile

There are 19426 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,208,505
Total ungapped length4,208,505
Number of contigs4
Contig N504,180,036
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,208,50544,208,5054,180,03600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridioides difficileClostridioides difficile

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020341515.1Clostridioides difficiletype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020341515.1Clostridioides difficiletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4393.2591.11
Best-match type99.4393.2591.11

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna