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32473_G02

Organism name:
Klebsiella michiganensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC11694
BioSample:
SAMEA2709021
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_900451375.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
UGJR01
Genome coverage:
100x

IDs: 1842951 [UID] 6982448 [GenBank]

See Genome Information for Klebsiella michiganensis

There are 993 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Klebsiella oxytoca' to 'Klebsiella michiganensis' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_900451375.1
Current Name::Klebsiella michiganensis
Previous Name::Klebsiella oxytoca
Date Updated::2020-07-31
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_009173485.1
A1 Name::Klebsiella michiganensis
A1 ANI::99.13%
A1 Query Coverage::90.4%
A1 Subject Coverage::89.66%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_900636985.1
A2 Name::Klebsiella oxytoca
A2 ANI::92.49%
A2 Query Coverage::81.23%
A2 Subject Coverage::84.68%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,107,074
Total ungapped length6,107,074
Number of contigs6
Contig N504,437,270
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,107,07466,107,0744,437,27000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensisKlebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002925905.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002925905.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1290.9689.70
Best-match type99.1290.9689.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna