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51334_B01

Organism name:
Mycoplasmopsis edwardii (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC10132
BioSample:
SAMEA4434527
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900476105.1 (latest)
RefSeq assembly accession:
GCF_900476105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 1903911 [UID] 7186428 [GenBank] 7259598 [RefSeq]

See Genome Information for Mycoplasmopsis edwardii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/28/2024 18:26:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::704
CDSs (total)::664
Genes (coding)::659
CDSs (with protein)::659
Genes (RNA)::40
rRNAs::2, 3, 3 (5S, 16S, 23S)
complete rRNAs::2, 3, 3 (5S, 16S, 23S)
tRNAs::29
ncRNAs::3
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::3 of 5
Pseudo Genes (incomplete)::2 of 5
Pseudo Genes (internal stop)::3 of 5
Pseudo Genes (multiple problems)::2 of 5
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length832,213
Total ungapped length832,213
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900476104.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LS991951.1=NZ_LS991951.1

Assembly statistics

MoleculeTotal
Length
Chromosome 832,213

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycoplasmopsis edwardiiMycoplasmopsis edwardii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900660585.1Mycoplasmopsis canistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.8027.7923.20

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected