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39282_E01-4

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC86
BioSample:
SAMEA3446340
BioProject:
PRJEB6403
Submitter:
SC
Date:
2019/03/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900699165.1 (latest)
RefSeq assembly accession:
GCF_900699165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 2380791 [UID] 8844408 [GenBank] 8967738 [RefSeq]

See Genome Information for Escherichia coli

There are 266889 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/02/2023 06:59:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,931
CDSs (total)::4,810
Genes (coding)::4,531
CDSs (with protein)::4,531
Genes (RNA)::121
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::87
ncRNAs::12
Pseudo Genes (total)::279
CDSs (without protein)::279
Pseudo Genes (ambiguous residues)::0 of 279
Pseudo Genes (frameshifted)::131 of 279
Pseudo Genes (incomplete)::147 of 279
Pseudo Genes (internal stop)::61 of 279
Pseudo Genes (multiple problems)::54 of 279
Pseudo Genes (short protein)::4 of 279
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,102,517
Total ungapped length5,102,517
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900699164.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR217818.1=NZ_LR217818.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,102,517

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2989.1485.40
Best-match type99.2989.1485.40

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna