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MGYG-HGUT-00003

  • Anomalous assembly.
Organism name:
Rikenellaceae bacterium (CFB group bacteria)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00003
BioSample:
SAMEA5849504
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genus undefined
GenBank assembly accession:
GCA_902362205.1 (latest)
RefSeq assembly accession:
GCF_902362205.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIWH01
Genome coverage:
10x

IDs: 4339931 [UID] 13201448 [GenBank] 13333648 [RefSeq]

See Genome Information for Rikenellaceae bacterium

Pathogen Detection Resources

There are 202 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,234,232
Total ungapped length3,229,509
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50557,292
Scaffold L503
Number of contigs35
Contig N50158,570
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,234,232183,229,509557,292170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rikenellaceae bacteriumRikenellaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025145845.1Alistipes shahiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7680.0367.84

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly