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MGYG-HGUT-00010

Organism name:
Mammaliicoccus lentus (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-00010
BioSample:
SAMEA5849511
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902362265.1 (latest)
RefSeq assembly accession:
GCF_902362265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIVY01
Genome coverage:
10x

IDs: 4339951 [UID] 13201468 [GenBank] 13337238 [RefSeq]

See Genome Information for Mammaliicoccus lentus

Pathogen Detection Resources

There are 46 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,726,916
Total ungapped length2,726,400
Gaps between scaffolds0
Number of scaffolds55
Scaffold N5074,967
Scaffold L5010
Number of contigs58
Contig N5074,967
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,726,916552,726,40074,96730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mammaliicoccus lentusMammaliicoccus lentus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002902755.1Mammaliicoccus lentustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002902755.1Mammaliicoccus lentustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4187.8194.02
Best-match type99.4187.8194.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna