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MGYG-HGUT-00032

Organism name:
Hungatella hathewayi (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00032
BioSample:
SAMEA5849533
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902362405.1 (latest)
RefSeq assembly accession:
GCF_902362405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIXC01
Genome coverage:
10x

IDs: 4416731 [UID] 13386958 [GenBank] 13445418 [RefSeq]

See Genome Information for Hungatella hathewayi

Pathogen Detection Resources

There are 63 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length6,979,496
Total ungapped length6,969,461
Gaps between scaffolds0
Number of scaffolds58
Scaffold N50310,095
Scaffold L507
Number of contigs95
Contig N50157,466
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,979,496586,969,461310,095370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hungatella hathewayiHungatella hathewayi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160095.1Hungatella hathewayi DSM 13479suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014288005.1Hungatella hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.6752.6755.40
Best-match type96.9178.9576.86

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%