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MGYG-HGUT-00022

  • Anomalous assembly.
Organism name:
Faecalibacterium prausnitzii (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00022
BioSample:
SAMEA5849523
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_902362495.1 (latest)
RefSeq assembly accession:
GCF_902362495.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIWR01
Genome coverage:
10x

IDs: 4340091 [UID] 13201748 [GenBank] 13326628 [RefSeq]

See Genome Information for Faecalibacterium prausnitzii

Pathogen Detection Resources

There are 741 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,063,217
Total ungapped length3,052,216
Gaps between scaffolds0
Number of scaffolds23
Scaffold N50304,438
Scaffold L504
Number of contigs70
Contig N50117,809
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,063,217233,052,216304,438470

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalibacterium prausnitziiFaecalibacterium prausnitzii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_032584275.1Faecalibacterium prausnitziisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010509575.1Faecalibacterium duncaniaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type87.1642.2342.09
Best-match type99.9999.8198.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate