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MGYG-HGUT-00047

Organism name:
Clostridium disporicum (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00047
BioSample:
SAMEA5849548
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902362765.1 (latest)
RefSeq assembly accession:
GCF_902362765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIXQ01
Genome coverage:
10x

IDs: 4416921 [UID] 13387338 [GenBank] 13435238 [RefSeq]

See Genome Information for Clostridium disporicum

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,449,564
Total ungapped length3,448,647
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50144,642
Scaffold L509
Number of contigs61
Contig N50142,689
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,449,564573,448,647144,64240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium disporicumClostridium disporicum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014287825.1Clostridium hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2368.5156.85

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna