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MGYG-HGUT-00081

Organism name:
Corynebacterium propinquum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-00081
BioSample:
SAMEA5849582
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902362995.1 (latest)
RefSeq assembly accession:
GCF_902362995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIYR01
Genome coverage:
10x

IDs: 4340291 [UID] 13202148 [GenBank] 13325128 [RefSeq]

See Genome Information for Corynebacterium propinquum

Pathogen Detection Resources

There are 44 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,504,704
Total ungapped length2,502,899
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50230,435
Scaffold L504
Number of contigs24
Contig N50215,262
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,504,704182,502,899230,43560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium propinquumCorynebacterium propinquum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000375525.1Corynebacterium propinquum DSM 44285type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000375525.1Corynebacterium propinquumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8892.7094.37
Best-match type97.8892.7094.37

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna