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MGYG-HGUT-00115

Organism name:
Clostridiaceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00115
BioSample:
SAMEA5849616
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_902363375.1 (latest)
RefSeq assembly accession:
GCF_902363375.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABIZX01
Genome coverage:
10x

IDs: 4340431 [UID] 13202428 [GenBank] 13315798 [RefSeq]

See Genome Information for Clostridiaceae bacterium

Pathogen Detection Resources

There are 466 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,522,150
Total ungapped length3,522,150
Number of contigs23
Contig N50779,698
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,522,150233,522,150779,69800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiaceae bacteriumClostridiaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003606265.1Clostridium septicumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.390.971.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena