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MGYG-HGUT-00192

Organism name:
Holdemania filiformis (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-00192
BioSample:
SAMEA5849694
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902364195.1 (latest)
RefSeq assembly accession:
GCF_902364195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJCV01
Genome coverage:
10x

IDs: 4340891 [UID] 13203568 [GenBank] 13332128 [RefSeq]

See Genome Information for Holdemania filiformis

Pathogen Detection Resources

There are 16 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,744,856
Total ungapped length3,744,494
Gaps between scaffolds0
Number of scaffolds48
Scaffold N50141,100
Scaffold L509
Number of contigs58
Contig N50141,100
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,744,856483,744,494141,100100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Holdemania filiformisHoldemania filiformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000157995.1Holdemania filiformis DSM 12042type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000157995.1Holdemania filiformistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8284.7783.45
Best-match type96.8284.7783.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna