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MGYG-HGUT-00198

Organism name:
Enterocloster citroniae (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00198
BioSample:
SAMEA5849700
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902364255.1 (latest)
RefSeq assembly accession:
GCF_902364255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJDD01
Genome coverage:
10x

IDs: 4417701 [UID] 13388898 [GenBank] 13444838 [RefSeq]

See Genome Information for Enterocloster citroniae

Pathogen Detection Resources

There are 18 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length6,476,507
Total ungapped length6,476,047
Gaps between scaffolds0
Number of scaffolds63
Scaffold N50687,085
Scaffold L504
Number of contigs92
Contig N50371,060
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,476,507636,476,047687,085290

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterocloster citroniaeEnterocloster citroniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002234575.2Enterocloster bolteaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.6414.1213.82

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna