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MGYG-HGUT-00218

Organism name:
Acidaminococcaceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00218
BioSample:
SAMEA5849720
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_902364405.1 (latest)
RefSeq assembly accession:
GCF_902364405.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJDR01
Genome coverage:
10x

IDs: 4340981 [UID] 13203988 [GenBank] 15519588 [RefSeq]

See Genome Information for Acidaminococcaceae bacterium

Pathogen Detection Resources

There are 157 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,599,783
Total ungapped length2,599,623
Gaps between scaffolds0
Number of scaffolds75
Scaffold N5095,595
Scaffold L508
Number of contigs91
Contig N5091,754
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,599,783752,599,62395,595160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acidaminococcaceae bacteriumAcidaminococcaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021044795.1Acidaminococcus hominissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3091.9290.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly