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MGYG-HGUT-00234

Organism name:
Vagococcus teuberi (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-00234
BioSample:
SAMEA5849736
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902364615.1 (latest)
RefSeq assembly accession:
GCF_902364615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJEN01
Genome coverage:
10x

IDs: 4417841 [UID] 13389178 [GenBank] 13443298 [RefSeq]

See Genome Information for Vagococcus teuberi

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,258,161
Total ungapped length2,257,968
Gaps between scaffolds0
Number of scaffolds50
Scaffold N50391,219
Scaffold L502
Number of contigs64
Contig N50391,219
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,258,161502,257,968391,219140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vagococcus teuberiVagococcus teuberi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001870205.1Vagococcus teuberitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001870205.1Vagococcus teuberitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8088.0791.05
Best-match type98.8088.0791.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna