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MGYG-HGUT-00260

Organism name:
Coriobacteriaceae bacterium (actinobacteria)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-00260
BioSample:
SAMEA5849762
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_902364865.1 (latest)
RefSeq assembly accession:
GCF_902364865.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJFE01
Genome coverage:
10x

IDs: 4417971 [UID] 13389438 [GenBank] 13436838 [RefSeq]

See Genome Information for Coriobacteriaceae bacterium

Pathogen Detection Resources

There are 188 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,309,823
Total ungapped length2,309,370
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50182,904
Scaffold L505
Number of contigs42
Contig N50153,518
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,309,823332,309,370182,90490

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coriobacteriaceae bacteriumCoriobacteriaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010509075.1Collinsella aerofacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3179.7975.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly