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MGYG-HGUT-00187

Organism name:
Lachnospira eligens (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-00187
BioSample:
SAMEA5849689
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_902366815.1 (latest)
RefSeq assembly accession:
GCF_902366815.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABJMX01
Genome coverage:
10x

IDs: 4341761 [UID] 13208168 [GenBank] 14282398 [RefSeq]

See Genome Information for Lachnospira eligens

There are 116 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,804,290
Total ungapped length2,804,290
Number of contigs150
Contig N5056,031
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)150

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,804,2901502,804,29056,03100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospira eligensLachnospira eligens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000146185.1[Eubacterium] eligens ATCC 27750suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000146185.1Lachnospira eligenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9681.3180.53
Best-match type94.9681.3180.53

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna