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MGYG-HGUT-01306

Organism name:
Phocaeicola coprocola (CFB group bacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01306
BioSample:
SAMEA5850809
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902373755.1 (latest)
RefSeq assembly accession:
GCF_902373755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKNL01
Genome coverage:
10x

IDs: 4418451 [UID] 13390398 [GenBank] 13435118 [RefSeq]

See Genome Information for Phocaeicola coprocola

There are 53 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,300,117
Total ungapped length4,295,617
Gaps between scaffolds0
Number of scaffolds90
Scaffold N5092,375
Scaffold L5016
Number of contigs135
Contig N5080,142
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)90

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,300,117904,295,61792,375450

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola coprocolaPhocaeicola coprocola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154845.1Phocaeicola coprocola DSM 17136suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154845.1Phocaeicola coprocolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna