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MGYG-HGUT-01311

  • Anomalous assembly.
Organism name:
Clostridiales bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-01311
BioSample:
SAMEA5850814
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genus undefined
GenBank assembly accession:
GCA_902373945.1 (latest)
RefSeq assembly accession:
GCF_902373945.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKOF01
Genome coverage:
10x

IDs: 4418571 [UID] 13390638 [GenBank] 14214368 [RefSeq]

See Genome Information for Clostridiales bacterium

Pathogen Detection Resources

There are 2255 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length6,548,966
Total ungapped length6,514,450
Gaps between scaffolds0
Number of scaffolds108
Scaffold N501,264,802
Scaffold L502
Number of contigs172
Contig N50161,796
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)108

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,548,9661086,514,4501,264,802640

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiales bacteriumClostridiales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900566185.1Lachnoclostridium pacaensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9036.5189.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly