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MGYG-HGUT-01364

Organism name:
Phocaeicola plebeius (CFB group bacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01364
BioSample:
SAMEA5850867
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902374375.1 (latest)
RefSeq assembly accession:
GCF_902374375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKPU01
Genome coverage:
10x

IDs: 4418851 [UID] 13391198 [GenBank] 13438278 [RefSeq]

See Genome Information for Phocaeicola plebeius

There are 112 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,421,924
Total ungapped length4,421,324
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50478,534
Scaffold L504
Number of contigs25
Contig N50478,534
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,421,924194,421,324478,53460

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola plebeiusPhocaeicola plebeius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000187895.1Phocaeicola plebeius DSM 17135suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000187895.1Phocaeicola plebeiussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna