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MGYG-HGUT-01424

Organism name:
Anaerococcus senegalensis (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-01424
BioSample:
SAMEA5850927
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902374885.1 (latest)
RefSeq assembly accession:
GCF_902374885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKRM01
Genome coverage:
10x

IDs: 4419121 [UID] 13391738 [GenBank] 13436338 [RefSeq]

See Genome Information for Anaerococcus senegalensis

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,795,828
Total ungapped length1,780,308
Gaps between scaffolds0
Number of scaffolds21
Scaffold N501,367,741
Scaffold L501
Number of contigs39
Contig N50138,327
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)21

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,795,828211,780,3081,367,741180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerococcus senegalensisAnaerococcus senegalensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000173355.1Anaerococcus hydrogenalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.4874.7770.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna