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MGYG-HGUT-01464

  • Anomalous assembly.
Organism name:
Fusobacterium nucleatum (fusobacteria)
Taxonomy check:
Failed
Isolate:
MGYG-HGUT-01464
BioSample:
SAMEA5850967
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_902375245.1 (latest)
RefSeq assembly accession:
GCF_902375245.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKTD01
Genome coverage:
10x

IDs: 4419341 [UID] 13392178 [GenBank] 13442638 [RefSeq]

See Genome Information for Fusobacterium nucleatum

Pathogen Detection Resources

There are 169 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,631,404
Total ungapped length2,566,359
Gaps between scaffolds0
Number of scaffolds13
Scaffold N501,700,382
Scaffold L501
Number of contigs28
Contig N50226,957
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,631,404132,566,3591,700,382150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium nucleatumFusobacterium nucleatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_031191795.1Fusobacterium nucleatumsuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_035320945.1Fusobacterium polymorphumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.3166.6978.45
Best-match type96.9280.0183.60

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna