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MGYG-HGUT-01468

Organism name:
Candidatus Blastococcus massiliensis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-01468
BioSample:
SAMEA5850971
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902375265.1 (latest)
RefSeq assembly accession:
GCF_902375265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKTE01
Genome coverage:
10x

IDs: 4343931 [UID] 13221068 [GenBank] 18082928 [RefSeq]

See Genome Information for Candidatus Blastococcus massiliensis

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,874,680
Total ungapped length3,864,252
Gaps between scaffolds0
Number of scaffolds4
Scaffold N501,179,004
Scaffold L502
Number of contigs78
Contig N5090,427
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,874,68043,864,2521,179,004740

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Blastococcus massiliensisCandidatus Blastococcus massiliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900221005.1Blastococcus aggregatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.3667.9256.82

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna