U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



MGYG-HGUT-01485

Organism name:
Pseudomonas massiliensis (g-proteobacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01485
BioSample:
SAMEA5850988
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902375475.1 (latest)
RefSeq assembly accession:
GCF_902375475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKTZ01
Genome coverage:
10x

IDs: 4419451 [UID] 13392398 [GenBank] 13442078 [RefSeq]

See Genome Information for Pseudomonas massiliensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,723,534
Total ungapped length4,723,534
Number of contigs7
Contig N501,010,626
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,723,53474,723,5341,010,62600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas massiliensisPseudomonas massiliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000826105.1Pseudomonas massiliensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000826105.1Pseudomonas massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna