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MGYG-HGUT-01499

Organism name:
Faecalicatena contorta (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-01499
BioSample:
SAMEA5851002
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902375555.1 (latest)
RefSeq assembly accession:
GCF_902375555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKUE01
Genome coverage:
10x

IDs: 4419481 [UID] 13392458 [GenBank] 13442318 [RefSeq]

See Genome Information for Faecalicatena contorta

Pathogen Detection Resources

There are 16 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,156,194
Total ungapped length5,155,658
Gaps between scaffolds0
Number of scaffolds9
Scaffold N501,069,380
Scaffold L502
Number of contigs13
Contig N501,069,380
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,156,19495,155,6581,069,38040

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalicatena contortaFaecalicatena contorta

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169475.1Mediterraneibacter gnavussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.662.593.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena