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MGYG-HGUT-01514

Organism name:
Paenibacillus ihumii (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01514
BioSample:
SAMEA5851017
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902375655.1 (latest)
RefSeq assembly accession:
GCF_902375655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKUV01
Genome coverage:
10x

IDs: 4419551 [UID] 13392598 [GenBank] 13442938 [RefSeq]

See Genome Information for Paenibacillus ihumii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,924,107
Total ungapped length5,923,785
Gaps between scaffolds0
Number of scaffolds12
Scaffold N504,112,046
Scaffold L501
Number of contigs16
Contig N50867,979
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,924,107125,923,7854,112,04640

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus ihumiiPaenibacillus ihumii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001403875.1Paenibacillus ihumiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001403875.1Paenibacillus ihumiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna