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MGYG-HGUT-01517

Organism name:
Lactobacillus amylolyticus (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01517
BioSample:
SAMEA5851020
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902375705.1 (latest)
RefSeq assembly accession:
GCF_902375705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABKVD01
Genome coverage:
10x

IDs: 4419561 [UID] 13392618 [GenBank] 13441158 [RefSeq]

See Genome Information for Lactobacillus amylolyticus

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,537,388
Total ungapped length1,537,388
Number of contigs98
Contig N5054,804
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)98

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,537,388981,537,38854,80400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus amylolyticusLactobacillus amylolyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001435665.1Lactobacillus amylolyticus DSM 11664type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001435665.1Lactobacillus amylolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna