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MGYG-HGUT-01701

Organism name:
Corynebacterium afermentans (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01701
BioSample:
SAMEA5851205
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902377555.1 (latest)
RefSeq assembly accession:
GCF_902377555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABLBV01
Genome coverage:
10x

IDs: 4419931 [UID] 13393358 [GenBank] 13437858 [RefSeq]

See Genome Information for Corynebacterium afermentans

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,240,769
Total ungapped length2,240,769
Number of contigs50
Contig N5097,916
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,240,769502,240,76997,91600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium afermentansCorynebacterium afermentans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030408355.1Corynebacterium afermentans subsp. afermentanstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030408355.1Corynebacterium afermentanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5990.2585.13
Best-match type97.5990.2585.13

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna