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Source database (GenBank or RefSeq) File type

UHGG_MGYG-HGUT-01533

Organism name:: Corynebacterium ammoniagenes (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Isolate:: MGYG-HGUT-01533
BioSample:: SAMEA5851036
BioProject:: PRJEB33885
Submitter:: EMG
Date:: 2019/08/10
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_902381765.1 (latest)
RefSeq assembly accession:: GCF_902381765.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 10x

IDs: 4347321 [UID] 13227988 [GenBank] 13325808 [RefSeq]

See Genome Information for Corynebacterium ammoniagenes

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902381765.1	=	GCF_902381765.1	UHGG_MGYG-HGUT-01533	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 01:02:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,548
CDSs (total)::2,483
Genes (coding)::2,456
CDSs (with protein)::2,456
Genes (RNA)::65
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::10 of 27
Pseudo Genes (incomplete)::18 of 27
Pseudo Genes (internal stop)::4 of 27
Pseudo Genes (multiple problems)::5 of 27
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,790,185
Total ungapped length	2,790,185
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	100.00	100.00	100.00
Best-match type	100.00	100.00	100.00

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UHGG_MGYG-HGUT-01533

See Genome Information for Corynebacterium ammoniagenes

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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