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UHGG_MGYG-HGUT-01563

Organism name:
Murdochiella vaginalis (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-01563
BioSample:
SAMEA5851066
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_902381775.1 (latest)
RefSeq assembly accession:
GCF_902381775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4347331 [UID] 13228008 [GenBank] 13338678 [RefSeq]

See Genome Information for Murdochiella vaginalis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 00:48:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,491
CDSs (total)::1,434
Genes (coding)::1,420
CDSs (with protein)::1,420
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::1 of 14
Pseudo Genes (incomplete)::10 of 14
Pseudo Genes (internal stop)::3 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,671,491
Total ungapped length1,671,491
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902381774.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR698969.1=NZ_LR698969.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,671,491

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Murdochiella vaginalisMurdochiella vaginalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900119705.1Murdochiella vaginalistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900119705.1Murdochiella vaginalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna