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UHGG_MGYG-HGUT-02160

Organism name:
Candidatus Methanomassiliicoccus intestinalis (archaea)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-02160
BioSample:
SAMEA5851664
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902383905.1 (latest)
RefSeq assembly accession:
GCF_902383905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4349531 [UID] 13232448 [GenBank] 13320918 [RefSeq]

See Genome Information for Candidatus Methanomassiliicoccus intestinalis

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/06/2023 02:35:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,896
CDSs (total)::1,844
Genes (coding)::1,838
CDSs (with protein)::1,838
Genes (RNA)::52
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::6
CDSs (without protein)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::0 of 6
Pseudo Genes (incomplete)::2 of 6
Pseudo Genes (internal stop)::4 of 6
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,931,651
Total ungapped length1,931,651
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902383904.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1LR698974.1=NZ_LR698974.1

Assembly statistics

MoleculeTotal
Length
Chromosome 11,931,651

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Methanomassiliicoccus intestinalisCandidatus Methanomassiliicoccus intestinalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000308215.1Methanomassiliicoccus luminyensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.110.620.46

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena