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UHGG_MGYG-HGUT-02334

Organism name:
Bifidobacterium thermophilum (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-02334
BioSample:
SAMEA5851838
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_902385935.1 (latest)
RefSeq assembly accession:
GCF_902385935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4351291 [UID] 13235968 [GenBank] 13318638 [RefSeq]

See Genome Information for Bifidobacterium thermophilum

There are 18 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 00:51:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,745
CDSs (total)::1,683
Genes (coding)::1,644
CDSs (with protein)::1,644
Genes (RNA)::62
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::14 of 39
Pseudo Genes (incomplete)::26 of 39
Pseudo Genes (internal stop)::3 of 39
Pseudo Genes (multiple problems)::4 of 39
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,291,643
Total ungapped length2,291,643
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902385934.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR698979.1=NZ_LR698979.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,291,643

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium thermophilumBifidobacterium thermophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000741455.1Bifidobacterium thermacidophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.5881.3483.48

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna