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UHGG_MGYG-HGUT-02335

Organism name:
Yersinia enterocolitica (enterobacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02335
BioSample:
SAMEA5851839
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_902385945.1 (latest)
RefSeq assembly accession:
GCF_902385945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4351301 [UID] 13235988 [GenBank] 13337758 [RefSeq]

See Genome Information for Yersinia enterocolitica

There are 2298 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 01:10:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,103
CDSs (total)::3,998
Genes (coding)::3,815
CDSs (with protein)::3,815
Genes (RNA)::105
rRNAs::9, 7, 8 (5S, 16S, 23S)
complete rRNAs::9, 7, 8 (5S, 16S, 23S)
tRNAs::72
ncRNAs::9
Pseudo Genes (total)::183
CDSs (without protein)::183
Pseudo Genes (ambiguous residues)::0 of 183
Pseudo Genes (frameshifted)::88 of 183
Pseudo Genes (incomplete)::85 of 183
Pseudo Genes (internal stop)::42 of 183
Pseudo Genes (multiple problems)::30 of 183
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,528,241
Total ungapped length4,527,941
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,528,241
Scaffold L501
Number of contigs4
Contig N502,395,791
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902385944.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR698980.1=NZ_LR698980.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 4,528,24114,527,9414,528,24130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia enterocoliticaYersinia enterocolitica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637005.1Yersinia enterocolitica subsp. palearcticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637005.1Yersinia enterocoliticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9499.6098.90
Best-match type99.9499.6098.90

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna