U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



UHGG_MGYG-HGUT-02332

  • Anomalous assembly.
Organism name:
Campylobacter coli (e-proteobacteria)
Taxonomy check:
Failed
Isolate:
MGYG-HGUT-02332
BioSample:
SAMEA5851836
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_902385995.1 (latest)
RefSeq assembly accession:
GCF_902385995.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMHJ01
Genome coverage:
10x

IDs: 4351341 [UID] 13236068 [GenBank] 13318908 [RefSeq]

See Genome Information for Campylobacter coli

Pathogen Detection Resources

There are 32241 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,500,025
Total ungapped length1,500,025
Number of contigs217
Contig N5012,594
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)217

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,500,0252171,500,02512,59400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter coliCampylobacter coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254135.2Campylobacter coli LMG 9860type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254135.2Campylobacter colitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.5490.5473.36
Best-match type92.5490.5473.36

ANI result

Taxonomy check statusBest match statusComment
Failedbelow-threshold-matchna