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UHGG_MGYG-HGUT-02363

Organism name:
Raoultella ornithinolytica (enterobacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02363
BioSample:
SAMEA5851867
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902386325.1 (latest)
RefSeq assembly accession:
GCF_902386325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMIM01
Genome coverage:
10x

IDs: 4351591 [UID] 13236568 [GenBank] 13336118 [RefSeq]

See Genome Information for Raoultella ornithinolytica

There are 418 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,677,722
Total ungapped length5,677,722
Number of contigs47
Contig N50518,698
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)47

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,677,722475,677,722518,69800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Raoultella ornithinolyticaRaoultella ornithinolytica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001598295.1Raoultella ornithinolytica NBRC 105727 = ATCC 31898type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001598295.1Raoultella ornithinolyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5190.7893.14
Best-match type99.5190.7893.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna