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UHGG_MGYG-HGUT-02384

Organism name:
Lactobacillus helveticus (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02384
BioSample:
SAMEA5851888
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_902386585.1 (latest)
RefSeq assembly accession:
GCF_902386585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4351801 [UID] 13236988 [GenBank] 13334678 [RefSeq]

See Genome Information for Lactobacillus helveticus

There are 203 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 00:55:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,131
CDSs (total)::2,049
Genes (coding)::1,766
CDSs (with protein)::1,766
Genes (RNA)::82
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::283
CDSs (without protein)::283
Pseudo Genes (ambiguous residues)::0 of 283
Pseudo Genes (frameshifted)::184 of 283
Pseudo Genes (incomplete)::106 of 283
Pseudo Genes (internal stop)::82 of 283
Pseudo Genes (multiple problems)::80 of 283
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,058,319
Total ungapped length2,058,319
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902386584.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR698986.1=NZ_LR698986.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,058,319

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus helveticusLactobacillus helveticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029823695.1Lactobacillus helveticus DSM 20075 = CGMCC 1.1877type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029823695.1Lactobacillus helveticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1878.4886.22
Best-match type99.1878.4886.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna