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UHGG_MGYG-HGUT-02386

Organism name:
Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02386
BioSample:
SAMEA5851890
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902386645.1 (latest)
RefSeq assembly accession:
GCF_902386645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMJP01
Genome coverage:
10x

IDs: 4351831 [UID] 13237048 [GenBank] 13338918 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1239 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,412,302
Total ungapped length3,412,302
Number of contigs4
Contig N503,268,766
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,412,30243,412,3023,268,76600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarumLactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4288.5993.01
Best-match type99.4288.5993.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna