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UHGG_MGYG-HGUT-02436

Organism name:
Alcaligenaceae bacterium (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-02436
BioSample:
SAMEA5851941
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_902387155.1 (latest)
RefSeq assembly accession:
GCF_902387155.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMKW01
Genome coverage:
10x

IDs: 4352321 [UID] 13238028 [GenBank] 13345078 [RefSeq]

See Genome Information for Alcaligenaceae bacterium

There are 125 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,862,145
Total ungapped length5,862,145
Number of contigs57
Contig N50199,352
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,862,145575,862,145199,35200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alcaligenaceae bacteriumAlcaligenaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004216695.1Pigmentiphaga kullaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3083.3478.54

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna