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UHGG_MGYG-HGUT-02493

Organism name:
Enterococcus mundtii (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02493
BioSample:
SAMEA5851998
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902387675.1 (latest)
RefSeq assembly accession:
GCF_902387675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMMO01
Genome coverage:
10x

IDs: 4352891 [UID] 13239168 [GenBank] 13326668 [RefSeq]

See Genome Information for Enterococcus mundtii

Pathogen Detection Resources

There are 65 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,325,234
Total ungapped length3,324,683
Gaps between scaffolds0
Number of scaffolds51
Scaffold N50206,333
Scaffold L506
Number of contigs54
Contig N50206,333
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)51

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,325,234513,324,683206,33330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus mundtiiEnterococcus mundtii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002813755.1Enterococcus mundtiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002813755.1Enterococcus mundtiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.3780.3476.22
Best-match type96.3780.3476.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna