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UHGG_MGYG-HGUT-02499

Organism name:
Enterobacter roggenkampii (enterobacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02499
BioSample:
SAMEA5852004
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902387855.1 (latest)
RefSeq assembly accession:
GCF_902387855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABMNO01
Genome coverage:
10x

IDs: 4353041 [UID] 13239468 [GenBank] 15520988 [RefSeq]

See Genome Information for Enterobacter roggenkampii

There are 653 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Enterobacter cloacae' to 'Enterobacter roggenkampii' in June 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902387855.1
Current Name::Enterobacter roggenkampii
Previous Name::Enterobacter cloacae
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729805.1
A1 Name::Enterobacter roggenkampii
A1 ANI::98.63%
A1 Query Coverage::89.61%
A1 Subject Coverage::89.09%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_009660455.1
A2 Name::Enterobacter cloacae
A2 ANI::89.01%
A2 Query Coverage::81.01%
A2 Subject Coverage::81.49%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length4,872,341
Total ungapped length4,871,475
Gaps between scaffolds0
Number of scaffolds48
Scaffold N50293,424
Scaffold L506
Number of contigs62
Contig N50263,320
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,872,341484,871,475293,424140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter roggenkampiiEnterobacter roggenkampii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729805.1Enterobacter roggenkampiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729805.1Enterobacter roggenkampiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6389.6189.09
Best-match type98.6389.6189.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna