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UHGG_MGYG-HGUT-02528

Organism name:
Anaerostipes hadrus (firmicutes)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-02528
BioSample:
SAMEA5852033
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_902388025.1 (latest)
RefSeq assembly accession:
GCF_902388025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4353241 [UID] 13239868 [GenBank] 13317498 [RefSeq]

See Genome Information for Anaerostipes hadrus

There are 165 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/29/2024 00:26:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,187
CDSs (total)::3,086
Genes (coding)::3,007
CDSs (with protein)::3,007
Genes (RNA)::101
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::79
CDSs (without protein)::79
Pseudo Genes (ambiguous residues)::0 of 79
Pseudo Genes (frameshifted)::31 of 79
Pseudo Genes (incomplete)::48 of 79
Pseudo Genes (internal stop)::10 of 79
Pseudo Genes (multiple problems)::10 of 79
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,172,613
Total ungapped length3,172,613
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902388024.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR699012.1=NZ_LR699012.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,172,613

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerostipes hadrusAnaerostipes hadrus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000332875.2Anaerostipes hadrus ATCC 29173 = JCM 17467suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000332875.2Anaerostipes hadrussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6276.6487.71
Best-match type98.6276.6487.71

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna