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UHGG_MGYG-HGUT-02545

Organism name:
Faecalibacterium prausnitzii (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-02545
BioSample:
SAMEA5852050
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_902388275.1 (latest)
RefSeq assembly accession:
GCF_902388275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4353501 [UID] 13240388 [GenBank] 15735448 [RefSeq]

See Genome Information for Faecalibacterium prausnitzii

There are 741 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/14/2023 06:26:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,708
CDSs (total)::2,623
Genes (coding)::2,581
CDSs (with protein)::2,581
Genes (RNA)::85
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::11 of 42
Pseudo Genes (incomplete)::35 of 42
Pseudo Genes (internal stop)::1 of 42
Pseudo Genes (multiple problems)::5 of 42
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,833,887
Total ungapped length2,833,887
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902388274.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR699017.1=NZ_LR699017.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,833,887

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalibacterium prausnitziiFaecalibacterium prausnitzii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_032584275.1Faecalibacterium prausnitziisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_032584275.1Faecalibacterium prausnitziisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type87.3143.2640.03
Best-match type87.3143.2640.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna