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UHGG_MGYG-HGUT-04259

Organism name:
uncultured Atopobium sp. (actinobacteria)
Taxonomy check:
OK
Isolate:
MGYG-HGUT-04259
BioSample:
SAMEA5853766
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_902405965.1 (latest)
RefSeq assembly accession:
GCF_902405965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABPBZ01
Genome coverage:
10x

IDs: 4412151 [UID] 13377798 [GenBank] 44903158 [RefSeq]

See Genome Information for uncultured Atopobium sp.

Pathogen Detection Resources

There are 143 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,625,916
Total ungapped length1,625,916
Number of contigs9
Contig N50371,037
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,625,91691,625,916371,03700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
uncultured Atopobium sp.uncultured Atopobium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001437015.1Atopobium minutumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9394.9689.78

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna