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MIKK_117-2_draft_assembly

Organism name:
Oryzias latipes (Japanese medaka)
BioSample:
SAMEA8062563
BioProject:
PRJEB43089
Submitter:
EMBL-EBI
Date:
2021/03/21
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_905309375.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAJNPE01
Genome coverage:
25x

IDs: 9642491 [UID] 25805058 [GenBank]

See Genome Information for Oryzias latipes

Pathogen Detection Resources

There are 32 assemblies for this organism

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History (Show revision history)

Comment

Draft assembly of MIKK panel line 117-2. Assembled from Nanopore DNAreads wtdbg2 and polished with Illumina reads using Pilon

Global statistics

Total sequence length732,119,004
Total ungapped length732,119,004
Number of contigs2,810
Contig N50903,899
Contig L50227
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2,810

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced732,119,0042,810732,119,004903,89900